#!/usr/bin/env python
"""
crate_anon/nlp_manager/show_crate_medex_pipeline_options.py
===============================================================================
Copyright (C) 2015, University of Cambridge, Department of Psychiatry.
Created by Rudolf Cardinal (rnc1001@cam.ac.uk).
This file is part of CRATE.
CRATE is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
CRATE is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with CRATE. If not, see <https://www.gnu.org/licenses/>.
===============================================================================
**Run the compiled CrateMedexPipeline (Java) and show options.**
"""
import logging
from cardinal_pythonlib.logs import main_only_quicksetup_rootlogger
from crate_anon.common.constants import (
CratePath,
EnvVar,
)
from cardinal_pythonlib.subproc import check_call_verbose
from cardinal_pythonlib.sysops import get_envvar_or_die
[docs]def main() -> None:
"""
Command-line entry point.
"""
main_only_quicksetup_rootlogger(level=logging.DEBUG)
medex_home = get_envvar_or_die(EnvVar.MEDEX_HOME)
check_call_verbose(
[
"java",
"-classpath",
f"{CratePath.JAVA_CLASSES_DIR}:{medex_home}/bin:{medex_home}/lib/*", # noqa: E501
"CrateMedexPipeline",
"--help",
"-v",
"-v",
]
)
if __name__ == "__main__":
main()