CRATE
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Contents:

  • 1. Overview
  • 2. Package elements in brief
  • 3. Reference publications
  • 4. Installing CRATE
  • 5. Preprocessing tools
  • 6. Anonymisation
    • 6.1. Overview of anonymisation
    • 6.2. Data and database prerequisites
    • 6.3. The anonymiser config file
    • 6.4. Data dictionary (DD)
    • 6.5. Run the anonymiser
    • 6.6. Specific databases
    • 6.7. Using CRATE’s anonymisation API web server
    • 6.8. Anonymisation API documentation
  • 7. Natural language processing (NLP)
  • 8. Configuring the CRATE web interface
  • 9. Using the CRATE web interface
  • 10. Ancillary tools
  • 11. FAQs and troubleshooting
  • 12. Linkage tools
  • 13. Additional notes
  • 14. Automatic documentation of source code
  • 15. Index of CRATE commands
  • 16. Licences
  • 17. Change log/history
  • 18. Things to do
  • 19. Abbreviations
  • 20. Glossary
CRATE
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  • 6. Anonymisation
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6. Anonymisation

  • 6.1. Overview of anonymisation
  • 6.2. Data and database prerequisites
    • 6.2.1. Source database(s)
    • 6.2.2. Destination database(s)
    • 6.2.3. Secret administrative database(s)
    • 6.2.4. Web site administrative database
  • 6.3. The anonymiser config file
    • 6.3.1. Format of the configuration file
    • 6.3.2. [main] section
    • 6.3.3. [extra_regexes] section
    • 6.3.4. Database config sections
    • 6.3.5. Hasher definitions
    • 6.3.6. Anonymisation sequence
    • 6.3.7. Minimal anonymiser config
    • 6.3.8. Specimen config
  • 6.4. Data dictionary (DD)
    • 6.4.1. Drafting a data dictionary
    • 6.4.2. Columns in the data dictionary
    • 6.4.3. Minimal data dictionary example
  • 6.5. Run the anonymiser
    • 6.5.1. crate_anonymise
    • 6.5.2. crate_anonymise_multiprocess
    • 6.5.3. crate_anon_show_counts
    • 6.5.4. crate_anon_check_text_extractor
    • 6.5.5. crate_anon_summarize_dd
  • 6.6. Specific databases
    • 6.6.1. Servelec RiO
    • 6.6.2. PCMIS
    • 6.6.3. TPP SystmOne
  • 6.7. Using CRATE’s anonymisation API web server
  • 6.8. Anonymisation API documentation
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© Copyright 2015, University of Cambridge, Department of Psychiatry. Revision ba82709a.

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