#!/usr/bin/env python
"""
crate_anon/nlp_manager/run_gate_kcl_lewy_demo.py
===============================================================================
Copyright (C) 2015, University of Cambridge, Department of Psychiatry.
Created by Rudolf Cardinal (rnc1001@cam.ac.uk).
This file is part of CRATE.
CRATE is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
CRATE is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with CRATE. If not, see <https://www.gnu.org/licenses/>.
===============================================================================
**Run the GATE ANNIE (people and places) demo via CRATE.**
"""
import logging
import os
from cardinal_pythonlib.logs import main_only_quicksetup_rootlogger
from crate_anon.common.constants import (
CratePath,
DEMO_NLP_INPUT_TERMINATOR,
DEMO_NLP_OUTPUT_TERMINATOR,
EnvVar,
)
from cardinal_pythonlib.subproc import check_call_verbose
from cardinal_pythonlib.sysops import get_envvar_or_die
[docs]def main() -> None:
"""
Command-line entry point.
"""
main_only_quicksetup_rootlogger(level=logging.DEBUG)
gate_home = get_envvar_or_die(EnvVar.GATE_HOME)
plugin_file = get_envvar_or_die(EnvVar.CRATE_GATE_PLUGIN_FILE)
kcl_lewy_dir = get_envvar_or_die(EnvVar.KCL_LEWY_BODY_DIAGNOSIS_DIR)
check_call_verbose(
[
"java",
"-classpath",
f"{CratePath.JAVA_CLASSES_DIR}:{gate_home}/lib/*",
f"-Dgate.home={gate_home}",
"CrateGatePipeline",
"--pluginfile",
plugin_file,
"--gate_app",
os.path.join(kcl_lewy_dir, "application.xgapp"),
"--set_annotation",
"",
"DiagnosisAlmost",
"--set_annotation",
"Automatic",
"cDiagnosis",
"--input_terminator",
DEMO_NLP_INPUT_TERMINATOR,
"--output_terminator",
DEMO_NLP_OUTPUT_TERMINATOR,
"--suppress_gate_stdout",
"--show_contents_on_crash",
"-v",
"-v",
]
)
if __name__ == "__main__":
main()