CRATE
stable
Contents:
1. Overview
2. Package elements in brief
3. Reference publications
4. Installing CRATE
5. Preprocessing tools
6. Anonymisation
7. Natural language processing (NLP)
8. Configuring the CRATE web interface
9. Using the CRATE web interface
10. Ancillary tools
11. FAQs and troubleshooting
12. Linkage tools
13. Additional notes
14. Automatic documentation of source code
14.1. crate_anon/anonymise
14.2. crate_anon/common
14.3. crate_anon/crateweb
14.4. crate_anon/linkage
14.5. crate_anon/nlp_manager
14.5.1. crate_anon/nlp_manager/CrateGatePipeline.java
14.5.2. crate_anon/nlp_manager/CrateMedexPipeline.java
14.5.3. crate_anon.nlp_manager.__init__
14.5.4. crate_anon.nlp_manager.all_processors
14.5.5. crate_anon.nlp_manager.base_nlp_parser
14.5.6. crate_anon.nlp_manager.build_gate_java_interface
14.5.7. crate_anon.nlp_manager.build_medex_itself
14.5.8. crate_anon.nlp_manager.build_medex_java_interface
14.5.9. crate_anon.nlp_manager.cloud_config
14.5.10. crate_anon.nlp_manager.cloud_parser
14.5.11. crate_anon.nlp_manager.cloud_request
14.5.12. crate_anon.nlp_manager.cloud_request_sender
14.5.13. crate_anon.nlp_manager.cloud_run_info
14.5.14. crate_anon.nlp_manager.constants
14.5.15. crate_anon.nlp_manager.input_field_config
14.5.16. crate_anon.nlp_manager.launch_multiprocess_nlp
14.5.17. crate_anon.nlp_manager.models
14.5.18. crate_anon.nlp_manager.nlp_definition
14.5.19. crate_anon.nlp_manager.nlp_manager
14.5.20. crate_anon.nlp_manager.number
14.5.21. crate_anon.nlp_manager.output_user_config
14.5.22. crate_anon.nlp_manager.parse_biochemistry
14.5.23. crate_anon.nlp_manager.parse_clinical
14.5.24. crate_anon.nlp_manager.parse_cognitive
14.5.25. crate_anon.nlp_manager.parse_gate
14.5.26. crate_anon.nlp_manager.parse_haematology
14.5.27. crate_anon.nlp_manager.parse_medex
14.5.28. crate_anon.nlp_manager.parse_substance_misuse
14.5.29. crate_anon.nlp_manager.prepare_umls_for_bioyodie
14.5.30. crate_anon.nlp_manager.regex_func
14.5.31. crate_anon.nlp_manager.regex_numbers
14.5.32. crate_anon.nlp_manager.regex_parser
14.5.33. crate_anon.nlp_manager.regex_read_codes
14.5.34. crate_anon.nlp_manager.regex_units
14.5.35. crate_anon.nlp_manager.run_crate_nlp_demo
14.5.36. crate_anon.nlp_manager.run_gate_annie_demo
14.5.37. crate_anon.nlp_manager.run_gate_kcl_kconnect_demo
14.5.38. crate_anon.nlp_manager.run_gate_kcl_lewy_demo
14.5.39. crate_anon.nlp_manager.run_gate_kcl_pharmacotherapy_demo
14.5.40. crate_anon.nlp_manager.show_crate_gate_pipeline_options
14.5.41. crate_anon.nlp_manager.show_crate_medex_pipeline_options
14.5.42. crate_anon.nlp_manager.tests.__init__
14.5.43. crate_anon.nlp_manager.tests.all_processors_tests
14.5.44. crate_anon.nlp_manager.tests.cloud_request_process_tests
14.5.45. crate_anon.nlp_manager.tests.cloud_request_sender_tests
14.5.46. crate_anon.nlp_manager.tests.nlp_parser_tests
14.5.47. crate_anon.nlp_manager.tests.parse_biochemistry_tests
14.5.48. crate_anon.nlp_manager.tests.parse_clinical_tests
14.5.49. crate_anon.nlp_manager.tests.parse_cognitive_tests
14.5.50. crate_anon.nlp_manager.tests.parse_haematology_tests
14.5.51. crate_anon.nlp_manager.tests.parse_substance_misuse_tests
14.5.52. crate_anon.nlp_manager.tests.regex_numbers_tests
14.5.53. crate_anon.nlp_manager.tests.regex_parser_tests
14.5.54. crate_anon.nlp_manager.tests.regex_read_codes_tests
14.5.55. crate_anon.nlp_manager.tests.regex_test_helperfunc
14.5.56. crate_anon.nlp_manager.tests.regex_units_tests
14.6. crate_anon/nlp_webserver
14.7. crate_anon/preprocess
14.8. crate_anon/tools
15. Index of CRATE commands
16. Licences
17. Change log/history
18. Things to do
19. Abbreviations
20. Glossary
CRATE
»
14.
Automatic documentation of source code
»
14.5.
crate_anon/nlp_manager
»
14.5.29.
crate_anon.nlp_manager.prepare_umls_for_bioyodie
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14.5.29.
crate_anon.nlp_manager.prepare_umls_for_bioyodie
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